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Biotechnology Information transcriptome shotgun assembly (tsa) database
Transcriptome Shotgun Assembly (Tsa) Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome+shotgun+assembly+database/transcriptome+shotgun+assembly++tsa++database/pm40597597-68-25-28
Average 90 stars, based on 1 article reviews
transcriptome shotgun assembly (tsa) database - by Bioz Stars, 2026-10
90/100 stars

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Virus:

Article Title: Exploring the transcriptome of immature stages of Ornithodoros hermsi , the soft-tick vector of tick-borne relapsing fever
Article Snippet: .. The DNA coding sequences (CDS) with an open reading frame (ORF) of at least 100 nucleotides were extracted based on BLASTp results from several databases, including subsets of the non-redundant and transcriptome shotgun assembly from National Center for Biotechnology Information (NCBI) databases (chelicerata, Rickettsiales, and Borreliaceae), RefSeq invertebrate ( https://ftp.ncbi.nlm.nih.gov/refseq/release/invertebrate/ ), RefSeq protozoa ( https://ftp.ncbi.nlm.nih.gov/refseq/release/protozoa/ ), RefSeq mitochondrion ( https://ftp.ncbi.nlm.nih.gov/refseq/release/mitochondrion/ ), tick genomes , mouse genome, and virus-phage. ..

other:

Article Title: Folate-Mediated One-Carbon Metabolism in the Crustacean Copepod Calanus finmarchicus: Identification of Transcripts and Relative Expression across Development
Article Snippet: The E. affinis sequences were used to mine the transcriptome shotgun assembly (TSA) database from the National Center for Biotechnology Information (NCBI) limiting the searches to C. finmarchicus transcriptome (PRJNA236528) (search date October 2022).

Article Title: Identification of two putative novel deltapartitiviruses and an enamovirus in coriander transcriptomes.
Article Snippet: In recent times, novel plant viral sequences are being increasingly discovered by probing the plant transcriptomeassembled contigs available in Transcriptome Shotgun Assembly (TSA) database of National Centre for Biotechnology Information (Bejerman et al. 2021, 2022; Bejerman and Debat 2022; Sidharthan et al. 2022a, 2022b, 2022c; Sidharthan et al. 2023).

Isolation:

Article Title: New approaches to facilitate rapid domestication of a wild plant to an oilseed crop: example pennycress (Thlaspi arvense L.).
Article Snippet: Oilseed crops are sources of oils and seed meal having a multitude of uses.. While the domestication of soybean and rapeseed took extended periods of time, new genome-based techniques have ushered in an era where crop domestication can occur rapidly.. One attractive target for rapid domestication is the winter annual plant Field Pennycress (Thlaspi arvense L.; pennycress; Brassicaceae).



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